Change git.cmd to RunWithContext (#18693)

Change all `cmd...Pipeline` commands to `cmd.RunWithContext`.

#18553

Co-authored-by: Martin Scholz <martin.scholz@versasec.com>

modules/git/batch_reader.go

@@ -34,7 +34,11 @@ func EnsureValidGitRepository(ctx context.Context, repoPath string) error {
 	stderr := strings.Builder{}
 	err := NewCommand(ctx, "rev-parse").
 		SetDescription(fmt.Sprintf("%s rev-parse [repo_path: %s]", GitExecutable, repoPath)).
-		RunInDirFullPipeline(repoPath, nil, &stderr, nil)
+		RunWithContext(&RunContext{
+			Timeout: -1,
+			Dir:     repoPath,
+			Stderr:  &stderr,
+		})
 	if err != nil {
 		return ConcatenateError(err, (&stderr).String())
 	}
@@ -61,7 +65,13 @@ func CatFileBatchCheck(ctx context.Context, repoPath string) (WriteCloserError,
 		stderr := strings.Builder{}
 		err := NewCommand(ctx, "cat-file", "--batch-check").
 			SetDescription(fmt.Sprintf("%s cat-file --batch-check [repo_path: %s] (%s:%d)", GitExecutable, repoPath, filename, line)).
-			RunInDirFullPipeline(repoPath, batchStdoutWriter, &stderr, batchStdinReader)
+			RunWithContext(&RunContext{
+				Timeout: -1,
+				Dir:     repoPath,
+				Stdin:   batchStdinReader,
+				Stdout:  batchStdoutWriter,
+				Stderr:  &stderr,
+			})
 		if err != nil {
 			_ = batchStdoutWriter.CloseWithError(ConcatenateError(err, (&stderr).String()))
 			_ = batchStdinReader.CloseWithError(ConcatenateError(err, (&stderr).String()))
@@ -100,7 +110,13 @@ func CatFileBatch(ctx context.Context, repoPath string) (WriteCloserError, *bufi
 		stderr := strings.Builder{}
 		err := NewCommand(ctx, "cat-file", "--batch").
 			SetDescription(fmt.Sprintf("%s cat-file --batch [repo_path: %s] (%s:%d)", GitExecutable, repoPath, filename, line)).
-			RunInDirFullPipeline(repoPath, batchStdoutWriter, &stderr, batchStdinReader)
+			RunWithContext(&RunContext{
+				Timeout: -1,
+				Dir:     repoPath,
+				Stdin:   batchStdinReader,
+				Stdout:  batchStdoutWriter,
+				Stderr:  &stderr,
+			})
 		if err != nil {
 			_ = batchStdoutWriter.CloseWithError(ConcatenateError(err, (&stderr).String()))
 			_ = batchStdinReader.CloseWithError(ConcatenateError(err, (&stderr).String()))

modules/git/commit.go

@@ -486,7 +486,12 @@ func GetCommitFileStatus(ctx context.Context, repoPath, commitID string) (*Commi
 	stderr := new(bytes.Buffer)
 	args := []string{"log", "--name-status", "-c", "--pretty=format:", "--parents", "--no-renames", "-z", "-1", commitID}
 
-	err := NewCommand(ctx, args...).RunInDirPipeline(repoPath, w, stderr)
+	err := NewCommand(ctx, args...).RunWithContext(&RunContext{
+		Timeout: -1,
+		Dir:     repoPath,
+		Stdout:  w,
+		Stderr:  stderr,
+	})
 	w.Close() // Close writer to exit parsing goroutine
 	if err != nil {
 		return nil, ConcatenateError(err, stderr.String())

modules/git/diff.go

@@ -301,9 +301,12 @@ func GetAffectedFiles(repo *Repository, oldCommitID, newCommitID string, env []s
 
 	// Run `git diff --name-only` to get the names of the changed files
 	err = NewCommand(repo.Ctx, "diff", "--name-only", oldCommitID, newCommitID).
-		RunInDirTimeoutEnvFullPipelineFunc(env, -1, repo.Path,
-			stdoutWriter, nil, nil,
-			func(ctx context.Context, cancel context.CancelFunc) error {
+		RunWithContext(&RunContext{
+			Env:     env,
+			Timeout: -1,
+			Dir:     repo.Path,
+			Stdout:  stdoutWriter,
+			PipelineFunc: func(ctx context.Context, cancel context.CancelFunc) error {
 				// Close the writer end of the pipe to begin processing
 				_ = stdoutWriter.Close()
 				defer func() {
@@ -320,7 +323,8 @@ func GetAffectedFiles(repo *Repository, oldCommitID, newCommitID string, env []s
 					affectedFiles = append(affectedFiles, path)
 				}
 				return scanner.Err()
-			})
+			},
+		})
 	if err != nil {
 		log.Error("Unable to get affected files for commits from %s to %s in %s: %v", oldCommitID, newCommitID, repo.Path, err)
 	}

modules/git/log_name_status.go

@@ -55,7 +55,12 @@ func LogNameStatusRepo(ctx context.Context, repository, head, treepath string, p
 
 	go func() {
 		stderr := strings.Builder{}
-		err := NewCommand(ctx, args...).RunInDirFullPipeline(repository, stdoutWriter, &stderr, nil)
+		err := NewCommand(ctx, args...).RunWithContext(&RunContext{
+			Timeout: -1,
+			Dir:     repository,
+			Stdout:  stdoutWriter,
+			Stderr:  &stderr,
+		})
 		if err != nil {
 			_ = stdoutWriter.CloseWithError(ConcatenateError(err, (&stderr).String()))
 		} else {

modules/git/pipeline/catfile.go

@@ -27,7 +27,13 @@ func CatFileBatchCheck(ctx context.Context, shasToCheckReader *io.PipeReader, ca
 	stderr := new(bytes.Buffer)
 	var errbuf strings.Builder
 	cmd := git.NewCommand(ctx, "cat-file", "--batch-check")
-	if err := cmd.RunInDirFullPipeline(tmpBasePath, catFileCheckWriter, stderr, shasToCheckReader); err != nil {
+	if err := cmd.RunWithContext(&git.RunContext{
+		Timeout: -1,
+		Dir:     tmpBasePath,
+		Stdin:   shasToCheckReader,
+		Stdout:  catFileCheckWriter,
+		Stderr:  stderr,
+	}); err != nil {
 		_ = catFileCheckWriter.CloseWithError(fmt.Errorf("git cat-file --batch-check [%s]: %v - %s", tmpBasePath, err, errbuf.String()))
 	}
 }
@@ -40,7 +46,12 @@ func CatFileBatchCheckAllObjects(ctx context.Context, catFileCheckWriter *io.Pip
 	stderr := new(bytes.Buffer)
 	var errbuf strings.Builder
 	cmd := git.NewCommand(ctx, "cat-file", "--batch-check", "--batch-all-objects")
-	if err := cmd.RunInDirPipeline(tmpBasePath, catFileCheckWriter, stderr); err != nil {
+	if err := cmd.RunWithContext(&git.RunContext{
+		Timeout: -1,
+		Dir:     tmpBasePath,
+		Stdout:  catFileCheckWriter,
+		Stderr:  stderr,
+	}); err != nil {
 		log.Error("git cat-file --batch-check --batch-all-object [%s]: %v - %s", tmpBasePath, err, errbuf.String())
 		err = fmt.Errorf("git cat-file --batch-check --batch-all-object [%s]: %v - %s", tmpBasePath, err, errbuf.String())
 		_ = catFileCheckWriter.CloseWithError(err)
@@ -56,7 +67,13 @@ func CatFileBatch(ctx context.Context, shasToBatchReader *io.PipeReader, catFile
 
 	stderr := new(bytes.Buffer)
 	var errbuf strings.Builder
-	if err := git.NewCommand(ctx, "cat-file", "--batch").RunInDirFullPipeline(tmpBasePath, catFileBatchWriter, stderr, shasToBatchReader); err != nil {
+	if err := git.NewCommand(ctx, "cat-file", "--batch").RunWithContext(&git.RunContext{
+		Timeout: -1,
+		Dir:     tmpBasePath,
+		Stdout:  catFileBatchWriter,
+		Stdin:   shasToBatchReader,
+		Stderr:  stderr,
+	}); err != nil {
 		_ = shasToBatchReader.CloseWithError(fmt.Errorf("git rev-list [%s]: %v - %s", tmpBasePath, err, errbuf.String()))
 	}
 }

modules/git/pipeline/lfs_nogogit.go

@@ -53,7 +53,12 @@ func FindLFSFile(repo *git.Repository, hash git.SHA1) ([]*LFSResult, error) {
 
 	go func() {
 		stderr := strings.Builder{}
-		err := git.NewCommand(repo.Ctx, "rev-list", "--all").RunInDirPipeline(repo.Path, revListWriter, &stderr)
+		err := git.NewCommand(repo.Ctx, "rev-list", "--all").RunWithContext(&git.RunContext{
+			Timeout: -1,
+			Dir:     repo.Path,
+			Stdout:  revListWriter,
+			Stderr:  &stderr,
+		})
 		if err != nil {
 			_ = revListWriter.CloseWithError(git.ConcatenateError(err, (&stderr).String()))
 		} else {

modules/git/pipeline/namerev.go

@@ -23,7 +23,13 @@ func NameRevStdin(ctx context.Context, shasToNameReader *io.PipeReader, nameRevS
 
 	stderr := new(bytes.Buffer)
 	var errbuf strings.Builder
-	if err := git.NewCommand(ctx, "name-rev", "--stdin", "--name-only", "--always").RunInDirFullPipeline(tmpBasePath, nameRevStdinWriter, stderr, shasToNameReader); err != nil {
+	if err := git.NewCommand(ctx, "name-rev", "--stdin", "--name-only", "--always").RunWithContext(&git.RunContext{
+		Timeout: -1,
+		Dir:     tmpBasePath,
+		Stdout:  nameRevStdinWriter,
+		Stdin:   shasToNameReader,
+		Stderr:  stderr,
+	}); err != nil {
 		_ = shasToNameReader.CloseWithError(fmt.Errorf("git name-rev [%s]: %v - %s", tmpBasePath, err, errbuf.String()))
 	}
 }

modules/git/pipeline/revlist.go

@@ -25,7 +25,12 @@ func RevListAllObjects(ctx context.Context, revListWriter *io.PipeWriter, wg *sy
 	stderr := new(bytes.Buffer)
 	var errbuf strings.Builder
 	cmd := git.NewCommand(ctx, "rev-list", "--objects", "--all")
-	if err := cmd.RunInDirPipeline(basePath, revListWriter, stderr); err != nil {
+	if err := cmd.RunWithContext(&git.RunContext{
+		Timeout: -1,
+		Dir:     basePath,
+		Stdout:  revListWriter,
+		Stderr:  stderr,
+	}); err != nil {
 		log.Error("git rev-list --objects --all [%s]: %v - %s", basePath, err, errbuf.String())
 		err = fmt.Errorf("git rev-list --objects --all [%s]: %v - %s", basePath, err, errbuf.String())
 		_ = revListWriter.CloseWithError(err)
@@ -40,7 +45,12 @@ func RevListObjects(ctx context.Context, revListWriter *io.PipeWriter, wg *sync.
 	stderr := new(bytes.Buffer)
 	var errbuf strings.Builder
 	cmd := git.NewCommand(ctx, "rev-list", "--objects", headSHA, "--not", baseSHA)
-	if err := cmd.RunInDirPipeline(tmpBasePath, revListWriter, stderr); err != nil {
+	if err := cmd.RunWithContext(&git.RunContext{
+		Timeout: -1,
+		Dir:     tmpBasePath,
+		Stdout:  revListWriter,
+		Stderr:  stderr,
+	}); err != nil {
 		log.Error("git rev-list [%s]: %v - %s", tmpBasePath, err, errbuf.String())
 		errChan <- fmt.Errorf("git rev-list [%s]: %v - %s", tmpBasePath, err, errbuf.String())
 	}

modules/git/repo.go

@@ -204,7 +204,13 @@ func Push(ctx context.Context, repoPath string, opts PushOptions) error {
 		opts.Timeout = -1
 	}
 
-	err := cmd.RunInDirTimeoutEnvPipeline(opts.Env, opts.Timeout, repoPath, &outbuf, &errbuf)
+	err := cmd.RunWithContext(&RunContext{
+		Env:     opts.Env,
+		Timeout: opts.Timeout,
+		Dir:     repoPath,
+		Stdout:  &outbuf,
+		Stderr:  &errbuf,
+	})
 	if err != nil {
 		if strings.Contains(errbuf.String(), "non-fast-forward") {
 			return &ErrPushOutOfDate{

modules/git/repo_archive.go

@@ -57,7 +57,12 @@ func (repo *Repository) CreateArchive(ctx context.Context, format ArchiveType, t
 	)
 
 	var stderr strings.Builder
-	err := NewCommand(ctx, args...).RunInDirPipeline(repo.Path, target, &stderr)
+	err := NewCommand(ctx, args...).RunWithContext(&RunContext{
+		Timeout: -1,
+		Dir:     repo.Path,
+		Stdout:  target,
+		Stderr:  &stderr,
+	})
 	if err != nil {
 		return ConcatenateError(err, stderr.String())
 	}

modules/git/repo_attribute.go

@@ -76,7 +76,13 @@ func (repo *Repository) CheckAttribute(opts CheckAttributeOpts) (map[string]map[
 
 	cmd := NewCommand(repo.Ctx, cmdArgs...)
 
-	if err := cmd.RunInDirTimeoutEnvPipeline(env, -1, repo.Path, stdOut, stdErr); err != nil {
+	if err := cmd.RunWithContext(&RunContext{
+		Env:     env,
+		Timeout: -1,
+		Dir:     repo.Path,
+		Stdout:  stdOut,
+		Stderr:  stdErr,
+	}); err != nil {
 		return nil, fmt.Errorf("failed to run check-attr: %v\n%s\n%s", err, stdOut.String(), stdErr.String())
 	}
 
@@ -182,9 +188,17 @@ func (c *CheckAttributeReader) Run() error {
 		_ = c.Close()
 	}()
 	stdErr := new(bytes.Buffer)
-	err := c.cmd.RunInDirTimeoutEnvFullPipelineFunc(c.env, -1, c.Repo.Path, c.stdOut, stdErr, c.stdinReader, func(_ context.Context, _ context.CancelFunc) error {
-		close(c.running)
-		return nil
+	err := c.cmd.RunWithContext(&RunContext{
+		Env:     c.env,
+		Timeout: -1,
+		Dir:     c.Repo.Path,
+		Stdin:   c.stdinReader,
+		Stdout:  c.stdOut,
+		Stderr:  stdErr,
+		PipelineFunc: func(_ context.Context, _ context.CancelFunc) error {
+			close(c.running)
+			return nil
+		},
 	})
 	if err != nil && c.ctx.Err() != nil && err.Error() != "signal: killed" {
 		return fmt.Errorf("failed to run attr-check. Error: %w\nStderr: %s", err, stdErr.String())

modules/git/repo_branch_nogogit.go

@@ -96,7 +96,12 @@ func walkShowRef(ctx context.Context, repoPath, arg string, skip, limit int, wal
 		if arg != "" {
 			args = append(args, arg)
 		}
-		err := NewCommand(ctx, args...).RunInDirPipeline(repoPath, stdoutWriter, stderrBuilder)
+		err := NewCommand(ctx, args...).RunWithContext(&RunContext{
+			Timeout: -1,
+			Dir:     repoPath,
+			Stdout:  stdoutWriter,
+			Stderr:  stderrBuilder,
+		})
 		if err != nil {
 			if stderrBuilder.Len() == 0 {
 				_ = stdoutWriter.Close()

modules/git/repo_commit.go

@@ -211,7 +211,12 @@ func (repo *Repository) CommitsByFileAndRange(revision, file string, page int) (
 		err := NewCommand(repo.Ctx, "log", revision, "--follow",
 			"--max-count="+strconv.Itoa(setting.Git.CommitsRangeSize*page),
 			prettyLogFormat, "--", file).
-			RunInDirPipeline(repo.Path, stdoutWriter, &stderr)
+			RunWithContext(&RunContext{
+				Timeout: -1,
+				Dir:     repo.Path,
+				Stdout:  stdoutWriter,
+				Stderr:  &stderr,
+			})
 		if err != nil {
 			_ = stdoutWriter.CloseWithError(ConcatenateError(err, (&stderr).String()))
 		} else {

modules/git/repo_compare.go

@@ -147,13 +147,23 @@ func (repo *Repository) GetDiffNumChangedFiles(base, head string, directComparis
 	}
 
 	if err := NewCommand(repo.Ctx, "diff", "-z", "--name-only", base+separator+head).
-		RunInDirPipeline(repo.Path, w, stderr); err != nil {
+		RunWithContext(&RunContext{
+			Timeout: -1,
+			Dir:     repo.Path,
+			Stdout:  w,
+			Stderr:  stderr,
+		}); err != nil {
 		if strings.Contains(stderr.String(), "no merge base") {
 			// git >= 2.28 now returns an error if base and head have become unrelated.
 			// previously it would return the results of git diff -z --name-only base head so let's try that...
 			w = &lineCountWriter{}
 			stderr.Reset()
-			if err = NewCommand(repo.Ctx, "diff", "-z", "--name-only", base, head).RunInDirPipeline(repo.Path, w, stderr); err == nil {
+			if err = NewCommand(repo.Ctx, "diff", "-z", "--name-only", base, head).RunWithContext(&RunContext{
+				Timeout: -1,
+				Dir:     repo.Path,
+				Stdout:  w,
+				Stderr:  stderr,
+			}); err == nil {
 				return w.numLines, nil
 			}
 		}
@@ -238,28 +248,46 @@ func (repo *Repository) GetDiffOrPatch(base, head string, w io.Writer, patch, bi
 
 // GetDiff generates and returns patch data between given revisions, optimized for human readability
 func (repo *Repository) GetDiff(base, head string, w io.Writer) error {
-	return NewCommand(repo.Ctx, "diff", "-p", base, head).
-		RunInDirPipeline(repo.Path, w, nil)
+	return NewCommand(repo.Ctx, "diff", "-p", base, head).RunWithContext(&RunContext{
+		Timeout: -1,
+		Dir:     repo.Path,
+		Stdout:  w,
+	})
 }
 
 // GetDiffBinary generates and returns patch data between given revisions, including binary diffs.
 func (repo *Repository) GetDiffBinary(base, head string, w io.Writer) error {
 	if CheckGitVersionAtLeast("1.7.7") == nil {
-		return NewCommand(repo.Ctx, "diff", "-p", "--binary", "--histogram", base, head).
-			RunInDirPipeline(repo.Path, w, nil)
+		return NewCommand(repo.Ctx, "diff", "-p", "--binary", "--histogram", base, head).RunWithContext(&RunContext{
+			Timeout: -1,
+			Dir:     repo.Path,
+			Stdout:  w,
+		})
 	}
-	return NewCommand(repo.Ctx, "diff", "-p", "--binary", "--patience", base, head).
-		RunInDirPipeline(repo.Path, w, nil)
+	return NewCommand(repo.Ctx, "diff", "-p", "--binary", "--patience", base, head).RunWithContext(&RunContext{
+		Timeout: -1,
+		Dir:     repo.Path,
+		Stdout:  w,
+	})
 }
 
 // GetPatch generates and returns format-patch data between given revisions, able to be used with `git apply`
 func (repo *Repository) GetPatch(base, head string, w io.Writer) error {
 	stderr := new(bytes.Buffer)
 	err := NewCommand(repo.Ctx, "format-patch", "--binary", "--stdout", base+"..."+head).
-		RunInDirPipeline(repo.Path, w, stderr)
+		RunWithContext(&RunContext{
+			Timeout: -1,
+			Dir:     repo.Path,
+			Stdout:  w,
+			Stderr:  stderr,
+		})
 	if err != nil && bytes.Contains(stderr.Bytes(), []byte("no merge base")) {
 		return NewCommand(repo.Ctx, "format-patch", "--binary", "--stdout", base, head).
-			RunInDirPipeline(repo.Path, w, nil)
+			RunWithContext(&RunContext{
+				Timeout: -1,
+				Dir:     repo.Path,
+				Stdout:  w,
+			})
 	}
 	return err
 }
@@ -268,7 +296,12 @@ func (repo *Repository) GetPatch(base, head string, w io.Writer) error {
 func (repo *Repository) GetDiffFromMergeBase(base, head string, w io.Writer) error {
 	stderr := new(bytes.Buffer)
 	err := NewCommand(repo.Ctx, "diff", "-p", "--binary", base+"..."+head).
-		RunInDirPipeline(repo.Path, w, stderr)
+		RunWithContext(&RunContext{
+			Timeout: -1,
+			Dir:     repo.Path,
+			Stdout:  w,
+			Stderr:  stderr,
+		})
 	if err != nil && bytes.Contains(stderr.Bytes(), []byte("no merge base")) {
 		return repo.GetDiffBinary(base, head, w)
 	}

modules/git/repo_index.go

@@ -106,7 +106,13 @@ func (repo *Repository) RemoveFilesFromIndex(filenames ...string) error {
 			buffer.WriteByte('\000')
 		}
 	}
-	return cmd.RunInDirFullPipeline(repo.Path, stdout, stderr, bytes.NewReader(buffer.Bytes()))
+	return cmd.RunWithContext(&RunContext{
+		Timeout: -1,
+		Dir:     repo.Path,
+		Stdin:   bytes.NewReader(buffer.Bytes()),
+		Stdout:  stdout,
+		Stderr:  stderr,
+	})
 }
 
 // AddObjectToIndex adds the provided object hash to the index at the provided filename

modules/git/repo_object.go

@@ -45,7 +45,13 @@ func (repo *Repository) hashObject(reader io.Reader) (string, error) {
 	cmd := NewCommand(repo.Ctx, "hash-object", "-w", "--stdin")
 	stdout := new(bytes.Buffer)
 	stderr := new(bytes.Buffer)
-	err := cmd.RunInDirFullPipeline(repo.Path, stdout, stderr, reader)
+	err := cmd.RunWithContext(&RunContext{
+		Timeout: -1,
+		Dir:     repo.Path,
+		Stdin:   reader,
+		Stdout:  stdout,
+		Stderr:  stderr,
+	})
 	if err != nil {
 		return "", err
 	}

modules/git/repo_ref_nogogit.go

@@ -23,7 +23,12 @@ func (repo *Repository) GetRefsFiltered(pattern string) ([]*Reference, error) {
 
 	go func() {
 		stderrBuilder := &strings.Builder{}
-		err := NewCommand(repo.Ctx, "for-each-ref").RunInDirPipeline(repo.Path, stdoutWriter, stderrBuilder)
+		err := NewCommand(repo.Ctx, "for-each-ref").RunWithContext(&RunContext{
+			Timeout: -1,
+			Dir:     repo.Path,
+			Stdout:  stdoutWriter,
+			Stderr:  stderrBuilder,
+		})
 		if err != nil {
 			_ = stdoutWriter.CloseWithError(ConcatenateError(err, stderrBuilder.String()))
 		} else {

modules/git/repo_stats.go

@@ -67,12 +67,14 @@ func (repo *Repository) GetCodeActivityStats(fromTime time.Time, branch string)
 	}
 
 	stderr := new(strings.Builder)
-	err = NewCommand(repo.Ctx, args...).RunInDirTimeoutEnvFullPipelineFunc(
-		nil, -1, repo.Path,
-		stdoutWriter, stderr, nil,
-		func(ctx context.Context, cancel context.CancelFunc) error {
+	err = NewCommand(repo.Ctx, args...).RunWithContext(&RunContext{
+		Env:     []string{},
+		Timeout: -1,
+		Dir:     repo.Path,
+		Stdout:  stdoutWriter,
+		Stderr:  stderr,
+		PipelineFunc: func(ctx context.Context, cancel context.CancelFunc) error {
 			_ = stdoutWriter.Close()
-
 			scanner := bufio.NewScanner(stdoutReader)
 			scanner.Split(bufio.ScanLines)
 			stats.CommitCount = 0
@@ -103,11 +105,7 @@ func (repo *Repository) GetCodeActivityStats(fromTime time.Time, branch string)
 				case 4: // E-mail
 					email := strings.ToLower(l)
 					if _, ok := authors[email]; !ok {
-						authors[email] = &CodeActivityAuthor{
-							Name:    author,
-							Email:   email,
-							Commits: 0,
-						}
+						authors[email] = &CodeActivityAuthor{Name: author, Email: email, Commits: 0}
 					}
 					authors[email].Commits++
 				default: // Changed file
@@ -128,7 +126,6 @@ func (repo *Repository) GetCodeActivityStats(fromTime time.Time, branch string)
 					}
 				}
 			}
-
 			a := make([]*CodeActivityAuthor, 0, len(authors))
 			for _, v := range authors {
 				a = append(a, v)
@@ -137,14 +134,13 @@ func (repo *Repository) GetCodeActivityStats(fromTime time.Time, branch string)
 			sort.Slice(a, func(i, j int) bool {
 				return a[i].Commits > a[j].Commits
 			})
-
 			stats.AuthorCount = int64(len(authors))
 			stats.ChangedFiles = int64(len(files))
 			stats.Authors = a
-
 			_ = stdoutReader.Close()
 			return nil
-		})
+		},
+	})
 	if err != nil {
 		return nil, fmt.Errorf("Failed to get GetCodeActivityStats for repository.\nError: %w\nStderr: %s", err, stderr)
 	}

modules/git/repo_tree.go

@@ -60,7 +60,14 @@ func (repo *Repository) CommitTree(author, committer *Signature, tree *Tree, opt
 
 	stdout := new(bytes.Buffer)
 	stderr := new(bytes.Buffer)
-	err = cmd.RunInDirTimeoutEnvFullPipeline(env, -1, repo.Path, stdout, stderr, messageBytes)
+	err = cmd.RunWithContext(&RunContext{
+		Env:     env,
+		Timeout: -1,
+		Dir:     repo.Path,
+		Stdin:   messageBytes,
+		Stdout:  stdout,
+		Stderr:  stderr,
+	})
 
 	if err != nil {
 		return SHA1{}, ConcatenateError(err, stderr.String())